Ubuntu

Ubuntu 20.04

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use MPICH for MPI and the corresponding HDF5 library.

apt-get install -y --no-install-recommends \
      g++ \
      make \
      file \
      automake \
      autoconf \
      libtool \
      curl \
      libcurl4-openssl-dev \
      python3-dev \
      libpython3.8 \
      python3-venv \
      python3-pip \
      zlib1g-dev \
      unzip \
      git \
      ca-certificates \
      libmpich-dev \
      mpich \
      libhdf5-mpich-103 \
      libhdf5-mpich-dev \
      sqlite3 \
      libsqlite3-0 \
      libsqlite3-dev \
      proj-bin \
      proj-data \
      libproj-dev \
      openssl \
      libssl1.1 \
      libssl-dev

Environment variables

export PYTHON_VERSION=3.8
export HDF5_INCDIR=/usr/include/hdf5/mpich
export HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/mpich
PREFIX_DIR=$HOME/pylith

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --disable-mpi \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-cmake \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy

Ubuntu 22.04

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use MPICH for MPI and the corresponding HDF5 library.

apt-get install -y --no-install-recommends \
      g++ \
      make \
      file \
      automake \
      autoconf \
      libtool \
      curl \
      python3-dev \
      libpython3.10 \
      python3-venv \
      python3-pip \
      zlib1g-dev \
      unzip \
      git \
      ca-certificates \
      libmpich-dev \
      mpich \
      libhdf5-mpich-103-1 \
      libhdf5-mpich-dev \
      sqlite3 \
      libsqlite3-0 \
      libsqlite3-dev \
      proj-bin \
      proj-data \
      libproj-dev \
      cmake 

Environment variables

export PYTHON_VERSION=3.10
export HDF5_INCDIR=/usr/include/hdf5/mpich
export HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/mpich
PREFIX_DIR=$HOME/pylith

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --disable-mpi \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy

Ubuntu 23.04

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use OpenMPI for MPI and the corresponding HDF5 library.

apt-get install -y --no-install-recommends \
      g++ \
      make \
      file \
      automake \
      autoconf \
      libtool \
      curl \
      python3-dev \
      libpython3.11 \
      python3-venv \
      python3-pip \
      zlib1g-dev \
      unzip \
      git \
      ca-certificates \
      libopenmpi-dev \
      libopenmpi3 \
      openmpi-bin \
      openmpi-common \
      libhdf5-openmpi-103-1 \
      libhdf5-openmpi-dev \
      sqlite3 \
      libsqlite3-0 \
      libsqlite3-dev \
      proj-bin \
      proj-data \
      libproj-dev \
      cmake

Environment variables

export PYTHON_VERSION=3.11
export HDF5_INCDIR=/usr/include/hdf5/openmpi
export HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/openmpi
PREFIX_DIR=$HOME/pylith

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --with-deps-prefix=${PREFIX_DIR}/dependencies \
    --disable-mpi \
    --disable-cmake \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy

Ubuntu 23.10

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use MPICH for MPI and the corresponding HDF5 library.

apt-get install -y --no-install-recommends \
      g++ \
      make \
      file \
      automake \
      autoconf \
      libtool \
      curl \
      python3-dev \
      libpython3.11 \
      python3-venv \
      python3-pip \
      zlib1g-dev \
      unzip \
      git \
      ca-certificates \
      libmpich-dev \
      libmpich \
      libhdf5-mpich-103-1 \
      libhdf5-mpich-dev \
      sqlite3 \
      libsqlite3-0 \
      libsqlite3-dev \
      proj-bin \
      proj-data \
      libproj-dev \
      cmake

Environment variables

export PYTHON_VERSION=3.11
export HDF5_INCDIR=/usr/include/hdf5/mpich
export HDF5_LIBDIR=/usr/lib/x86_64-linux-gnu/hdf5/mpich
PREFIX_DIR=$HOME/pylith

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --disable-mpi \
    --disable-cmake \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy