Fedora

Fedora 38

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use MPICH for MPI and the corresponding HDF5 library.

dnf install -y \
    gcc \
    gcc-c++ \
    make \
    file \
    diffutils \
    automake \
    autoconf \
    libtool \
    curl \
    openssh \
    python3 \
    python3-devel \
    python3-pip \
    zlib \
    zlib-devel \
    blas \
    blas-devel \
    lapack \
    lapack-devel \
    atlas \
    atlas-devel \
    openssl \
    openssl-libs \
    unzip \
    git \
    ca-certificates \
    mpich-devel \
    hdf5-mpich \
    hdf5-mpich-devel \
    sqlite \
    sqlite-libs \
    sqlite-devel \
    proj \
    proj-devel \
    cmake

Environment variables

export PYTHON_VERSION=3.11
export HDF5_INCDIR=/usr/include/mpich-x86_64
export HDF5_LIBDIR=/usr/lib64/mpich/lib
PREFIX_DIR=$HOME/pylith
PATH=$PATH:/usr/lib64/mpich/bin

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --disable-mpi \
    --disable-cmake \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy

Fedora 39

Operating system packages

We use the operating system packages for most of the dependencies. In this example, we use OpenMPI for MPI and the corresponding HDF5 library.

dnf install -y \
    gcc \
    gcc-c++ \
    make \
    file \
    diffutils \
    automake \
    autoconf \
    libtool \
    curl \
    openssh \
    python3 \
    python3-devel \
    python3-pip \
    zlib \
    zlib-devel \
    blas \
    blas-devel \
    lapack \
    lapack-devel \
    atlas \
    atlas-devel \
    openssl \
    openssl-libs \
    unzip \
    git \
    ca-certificates \
    openmpi-devel \
    hdf5-openmpi \
    hdf5-openmpi-devel \
    sqlite \
    sqlite-libs \
    sqlite-devel \
    proj \
    proj-devel \
    cmake

Environment variables

export PYTHON_VERSION=3.12
export HDF5_INCDIR=/usr/include/openmpi-x86_64
export HDF5_LIBDIR=/usr/lib64/openmpi/lib
PREFIX_DIR=$HOME/pylith
PATH=$PATH:/usr/lib64/openmpi/bin

Configure

$HOME/src/pylith/pylith-installer-4.2.0-0/configure \
    --prefix=$PREFIX_DIR \
    --with-fetch=curl \
    --with-fortran=no \
    --with-make-threads=$(nproc) \
    --with-hdf5-incdir=${HDF5_INCDIR} \
    --with-hdf5-libdir=${HDF5_LIBDIR} \
    --disable-mpi \
    --disable-cmake \
    --disable-sqlite \
    --disable-hdf5 \
    --disable-proj \
    --enable-catch2 \
    --enable-h5py \
    --enable-netcdf \
    --enable-netcdfpy